added matlab code for pxp

code/analysis/Matlab/Exeedance_SC/GetExeedanceP.m

+%% fist, i have to get the fitted parameters.
+% get the BICs from R. format should be: models x subs
+
+options.families = {[1,3,7,9], [2,4,8,10],[5,6]};
+
+%% VBA fullFB
+LLFull=load('LL_behavdat_fullFB_prob_flip.mat');
+[posteriorFull,outFull] = VBA_groupBMC(LLFull.m');
+
+%% VBA NoNeighrep
+LL_noNeigh=load('LLbehavdat_TI_prob_noNeighrep_flip.mat');
+[posteriornoNeigh,outnoNeigh] = VBA_groupBMC(LL_noNeigh.m');
+%% fire up the VBA toolbox
+LL_EEG=load('behavdat_TI_prob_EEGn35_flip.mat');
+[posteriorEEG,outEEG] = VBA_groupBMC(LL_EEG.m');
+%% fire up the VBA toolbox
+LL_online=load('LL_behavdat_TI_prob_online_flip.mat');
+%[posteriorOnline,outOnline] = VBA_groupBMC(LL_online.m',options);
+
+[posteriorOnline2,outOnline2] = VBA_groupBMC(LL_online.m');
+
+%% fire up the VBA toolbox
+LL_det=load('LL_behavdat_TI_det_flip.mat');
+[posteriordet,outdet] = VBA_groupBMC(LL_det.m');
+
+%% fire up the VBA toolbox and read all TI trials
+LL_AllTI=load('LL_behavdat_all_TI.mat');
+[posterior_AllTI,out_ALLTI] = VBA_groupBMC(LL_AllTI.m');
+
+%% save
+
+dataFull=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceFull_flip.mat'];
+dataNoNeighrep=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_NoNeighrep_flip.mat'];
+dataEEG=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceEEG_flip.mat'];
+dataOnline=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceOnline_flip.mat'];
+dataDet=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceDet_flip.mat'];
+dataALL=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_ALL_4.mat'];
+
+dataFullAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceFullAllInfo_flip.mat'];
+dataNoNeighrepAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_NoNeighrepAllInfo_flip.mat'];
+dataEEGAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceEEGAllInfo_flip.mat'];
+dataOnlineAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceOnlineAllInfo_flip.mat'];
+dataDetAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceDetAllInfo_flip.mat'];
+dataALLAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_ALLAllInfo_flip.mat'];
+
+outFullep=outFull.pxp;
+outnoNeighep=outnoNeigh.pxp;
+outEEGep=outEEG.pxp;
+outOnlineep=outOnline2.pxp;
+outdetep=outdet.pxp;
+outallep=out_ALLTI.pxp;
+
+save(dataFull, 'outFullep');
+save(dataNoNeighrep, 'outnoNeighep');
+save(dataEEG, 'outEEGep');
+save(dataOnline, 'outOnlineep');
+save(dataDet, 'outdetep');
+
+save(dataFullAllInfo, 'outFull');
+save(dataNoNeighrepAllInfo, 'outnoNeigh');
+save(dataEEGAllInfo, 'outEEG');
+save(dataOnlineAllInfo, 'outOnline');
+save(dataDetAllInfo, 'outdet');
+
+save(dataALLAllInfo, 'outallep');
+

code/analysis/Matlab/Exeedance_SC/GetExeedance_conf.m

+%% fist, i have to get the fitted parameters.
+% get the BICs from R. format should be: models x subs
+
+options.families = {[1,3,7,9], [2,4,8,10],[5,6]};
+
+%% VBA fullFB
+LLFull=load('LL_behavdat_fullFB_prob_conf.mat');
+[posteriorFull,outFull] = VBA_groupBMC(LLFull.m',options);
+
+%% VBA NoNeighrep
+LL_noNeigh=load('LLbehavdat_TI_prob_noNeighrep_conf.mat');
+[posteriornoNeigh,outnoNeigh] = VBA_groupBMC(LL_noNeigh.m',options);
+%% fire up the VBA toolbox
+LL_EEG=load('behavdat_TI_prob_EEGn35_conf.mat');
+[posteriorEEG,outEEG] = VBA_groupBMC(LL_EEG.m',options);
+%% fire up the VBA toolbox
+LL_online=load('LL_behavdat_TI_prob_online_conf.mat');
+[posteriorOnline,outOnline] = VBA_groupBMC(LL_online.m',options);
+
+%[posteriorOnline2,outOnline2] = VBA_groupBMC(man(:,[3,7]));
+
+%% fire up the VBA toolbox
+LL_det=load('LL_behavdat_TI_det_conf.mat');
+[posteriordet,outdet] = VBA_groupBMC(LL_det.m',options);
+
+%% fire up the VBA toolbox and read all TI trials
+LL_AllTI=load('LL_behavdat_all_TI.mat');
+[posterior_AllTI,out_ALLTI] = VBA_groupBMC(LL_AllTI.m',options);
+
+%% save
+
+dataFull=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceFull_conf.mat'];
+dataNoNeighrep=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_NoNeighrep_conf.mat'];
+dataEEG=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceEEG_conf.mat'];
+dataOnline=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceOnline_conf.mat'];
+dataDet=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceDet_conf.mat'];
+dataALL=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_ALL_4.mat'];
+
+dataFullAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceFullAllInfo_conf.mat'];
+dataNoNeighrepAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_NoNeighrepAllInfo_conf.mat'];
+dataEEGAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceEEGAllInfo_conf.mat'];
+dataOnlineAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceOnlineAllInfo_conf.mat'];
+dataDetAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceDetAllInfo_conf.mat'];
+dataALLAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_ALLAllInfo_conf.mat'];
+
+outFullep=outFull.ep;
+outnoNeighep=outnoNeigh.ep;
+outEEGep=outEEG.ep;
+outOnlineep=outOnline.ep;
+outdetep=outdet.ep;
+outallep=out_ALLTI.ep;
+
+save(dataFull, 'outFullep');
+save(dataNoNeighrep, 'outnoNeighep');
+save(dataEEG, 'outEEGep');
+save(dataOnline, 'outOnlineep');
+save(dataDet, 'outdetep');
+
+save(dataFullAllInfo, 'outFull');
+save(dataNoNeighrepAllInfo, 'outnoNeigh');
+save(dataEEGAllInfo, 'outEEG');
+save(dataOnlineAllInfo, 'outOnline');
+save(dataDetAllInfo, 'outdet');
+
+save(dataALLAllInfo, 'outallep');
+

code/analysis/Matlab/Exeedance_SC/GetExeedance_confmix.m

+%% fist, i have to get the fitted parameters.
+% get the BICs from R. format should be: models x subs
+
+options.families = {1:10 11:20};
+
+%% VBA fullFB
+LLFull=load('LL_behavdat_fullFB_prob.mat');
+LLFullconfmix=load('LL_behavdat_fullFB_prob_confmix.mat');
+
+LLFullconfmix_norm=cat(1,LLFull.m',LLFullconfmix.m');
+
+[posteriorFull,outFull] = VBA_groupBMC(LLFullconfmix.m');
+
+%% VBA NoNeighrep
+LL_noNeigh=load('LLbehavdat_TI_prob_noNeighrep.mat');
+LL_noNeighconfmix=load('LLbehavdat_TI_prob_noNeighrep_confmix.mat');
+LLnoNeighconfmix_norm=cat(1,LL_noNeigh.m',LL_noNeighconfmix.m');
+
+[posteriornoNeigh,outnoNeigh] = VBA_groupBMC(LL_noNeighconfmix.m');
+%% fire up the VBA toolbox
+LL_EEG=load('behavdat_TI_prob_EEGn35.mat');
+LL_EEGconfmix=load('behavdat_TI_prob_EEGn35_confmix.mat');
+
+LLconfmix_norm=cat(1,LL_EEG.m',LL_EEGconfmix.m');
+
+[posteriorEEG,outEEG] = VBA_groupBMC(LL_EEGconfmix.m');
+%% fire up the VBA toolbox
+LL_online=load('LL_behavdat_TI_prob_online.mat');
+LL_onlineconfmix=load('LL_behavdat_TI_prob_online_confmix.mat');
+LLonlineconfmix_norm=cat(1,LL_online.m',LL_onlineconfmix.m');
+
+[posteriorOnline,outOnline] = VBA_groupBMC(LL_onlineconfmix.m');
+
+%[posteriorOnline2,outOnline2] = VBA_groupBMC(man(:,[3,7]));
+
+%% fire up the VBA toolbox
+LL_det=load('LL_behavdat_TI_det_conf.mat');
+LL_detconfmix=load('LL_behavdat_TI_det_confmix.mat');
+
+LL_detconfmix_norm=cat(1,LL_det.m',LL_detconfmix.m');
+[posteriordet,outdet] = VBA_groupBMC(LL_detconfmix.m');
+
+%% fire up the VBA toolbox and read all TI trials
+%LL_AllTI=load('LL_behavdat_all_TI.mat');
+%[posterior_AllTI,out_ALLTI] = VBA_groupBMC(LL_AllTI.m',options);
+
+%% save
+
+dataFull=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceFull_confmix.mat'];
+dataNoNeighrep=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_NoNeighrep_confmix.mat'];
+dataEEG=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceEEG_confmix.mat'];
+dataOnline=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceOnline_confmix.mat'];
+dataDet=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceDet_confmix.mat'];
+%dataALL=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_ALL_4.mat'];
+
+dataFullAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceFullAllInfo_confmix.mat'];
+dataNoNeighrepAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_NoNeighrepAllInfo_confmix.mat'];
+dataEEGAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceEEGAllInfo_confmix.mat'];
+dataOnlineAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceOnlineAllInfo_confmix.mat'];
+dataDetAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedanceDetAllInfo_confmix.mat'];
+%dataALLAllInfo=['..' filesep '..' filesep 'R' filesep 'Simon' filesep 'B_Modelfits' filesep 'exceedance_ALLAllInfo_conf.mat'];
+
+outFullep=outFull.pxp;
+outnoNeighep=outnoNeigh.pxp;
+outEEGep=outEEG.pxp;
+outOnlineep=outOnline.pxp;
+outdetep=outdet.pxp;
+%outallep=out_ALLTI.ep;
+
+save(dataFull, 'outFullep');
+save(dataNoNeighrep, 'outnoNeighep');
+save(dataEEG, 'outEEGep');
+save(dataOnline, 'outOnlineep');
+save(dataDet, 'outdetep');
+
+save(dataFullAllInfo, 'outFull');
+save(dataNoNeighrepAllInfo, 'outnoNeigh');
+save(dataEEGAllInfo, 'outEEG');
+save(dataOnlineAllInfo, 'outOnline');
+save(dataDetAllInfo, 'outdet');
+
+%save(dataALLAllInfo, 'outallep');
+